G4KDTree.cc

Go to the documentation of this file.

//
// ********************************************************************
// * License and Disclaimer                                           *
// *                                                                  *
// * The  Geant4 software  is  copyright of the Copyright Holders  of *
// * the Geant4 Collaboration.  It is provided  under  the terms  and *
// * conditions of the Geant4 Software License,  included in the file *
// * LICENSE and available at  http://cern.ch/geant4/license .  These *
// * include a list of copyright holders.                             *
// *                                                                  *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work  make  any representation or  warranty, express or implied, *
// * regarding  this  software system or assume any liability for its *
// * use.  Please see the license in the file  LICENSE  and URL above *
// * for the full disclaimer and the limitation of liability.         *
// *                                                                  *
// * This  code  implementation is the result of  the  scientific and *
// * technical work of the GEANT4 collaboration.                      *
// * By using,  copying,  modifying or  distributing the software (or *
// * any work based  on the software)  you  agree  to acknowledge its *
// * use  in  resulting  scientific  publications,  and indicate your *
// * acceptance of all terms of the Geant4 Software license.          *
// ********************************************************************
//
// $Id: G4KDTree.cc 64057 2012-10-30 15:04:49Z gcosmo $
//
// Author: Mathieu Karamitros (kara (AT) cenbg . in2p3 . fr) 
//
// History:
// -----------
// 10 Oct 2011 M.Karamitros created
//
// -------------------------------------------------------------------
/*
 * Based on ``kdtree'', a library for working with kd-trees.
 * Copyright (C) 2007-2009 John Tsiombikas <nuclear@siggraph.org>
 * The original open-source version of this code
 * may be found at http://code.google.com/p/kdtree/
 *
 * Redistribution and use in source and binary forms, with or without
 * modification, are permitted provided that the following conditions are
 * met:
 * 1. Redistributions of source code must retain the above copyright
 * notice, this
 * list of conditions and the following disclaimer.
 * 2. Redistributions in binary form must reproduce the above copyright
 * notice,
 *  this list of conditions and the following disclaimer in the
 * documentation
 *  and/or other materials provided with the distribution.
 * 3. The name of the author may not be used to endorse or promote products
 *  derived from this software without specific prior written permission.
 *
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
 * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
 * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
 * IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT,
 * INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
 * LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
 * OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
 * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
 * OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
*/
/* single nearest neighbor search written by Tamas Nepusz
 * <tamas@cs.rhul.ac.uk>
*/
 
#include "globals.hh"
#include <stdio.h>
#include <stdlib.h>
#include <cmath>
#include "G4KDTree.hh"
#include "G4KDNode.hh"
#include "G4KDTreeResult.hh"
#include <list>
#include <iostream>
 
using namespace std;
 
//______________________________________________________________________
struct HyperRect
{
public:
    HyperRect(int dim, const double *min, const double *max)
    {
        fDim = dim;
        fMin = new double[fDim];
        fMax = new double[fDim];
        size_t size = fDim * sizeof(double);
        memcpy(fMin, min, size);
        memcpy(fMax, max, size);
   }
 
 
    ~HyperRect()
    {
        delete[] fMin;
        delete[] fMax;
    }
 
    HyperRect(const HyperRect& rect)
    {
        fDim = rect.fDim;
        fMin = new double[fDim];
        fMax = new double[fDim];
        size_t size = fDim * sizeof(double);
        memcpy(fMin, rect.fMin, size);
        memcpy(fMax, rect.fMax, size);
    }
 
    void Extend(const double *pos)
    {
        int i;
 
        for (i=0; i < fDim; i++)
        {
            if (pos[i] < fMin[i])
            {
                fMin[i] = pos[i];
            }
            if (pos[i] > fMax[i])
            {
                fMax[i] = pos[i];
            }
        }
    }
 
    bool CompareDistSqr(const double *pos, const double* bestmatch)
    {
        double result = 0;
 
        for (int i=0; i < fDim; i++)
        {
            if (pos[i] < fMin[i])
            {
                result += sqr(fMin[i] - pos[i]);
            }
            else if (pos[i] > fMax[i])
            {
                result += sqr(fMax[i] - pos[i]);
            }
 
            if(result >= *bestmatch) return false ;
        }
 
        return true ;
    }
 
    int GetDim(){return fDim;}
    double* GetMin(){return fMin;}
    double* GetMax(){return fMax;}
 
protected:
    int fDim;
    double *fMin, *fMax;              /* minimum/maximum coords */
 
private:
    // should not be used
    HyperRect& operator=(const HyperRect& rhs)
    {
        if(this == &rhs) return *this;
        return *this;
    }
};
 
//______________________________________________________________________
// KDTree methods
G4KDTree::G4KDTree (int k)
{
    fDim = k;
    fRoot = 0;
    fDestr = 0;
    fRect = 0;
    fNbNodes = 0;
}
 
G4KDTree::~G4KDTree ()
{
    if(fRoot) __Clear_Rec(fRoot);
    fRoot = 0;
 
    if (fRect)
    {
        delete fRect;
        fRect = 0;
    }
}
 
void G4KDTree::Clear()
{
    __Clear_Rec(fRoot);
    fRoot = 0;
    fNbNodes = 0;
 
    if (fRect)
    {
        delete fRect;
        fRect = 0;
    }
}
 
void G4KDTree::__Clear_Rec(G4KDNode *node)
{
    if(!node) return;
 
    if(node->GetLeft())  __Clear_Rec(node->GetLeft());
    if(node->GetRight()) __Clear_Rec(node->GetRight());
 
    if(fDestr)
    {
        if(node->GetData())
        {
            fDestr(node->GetData());
            node->SetData(0);
        }
    }
    delete node;
}
 
G4KDNode* G4KDTree::Insert(const double *pos, void *data)
{
    G4KDNode* node = 0 ;
    if(!fRoot)
    {
        fRoot =  new G4KDNode(this,pos,data,0, 0);
        node = fRoot;
        fNbNodes = 0;
        fNbNodes++;
    }
    else
    {
        if((node=fRoot->Insert(pos, data)))
        {
            fNbNodes++;
        }
    }
 
    if (fRect == 0)
    {
        fRect = new HyperRect(fDim,pos,pos);
    }
    else
    {
        fRect->Extend(pos);
    }
 
    return node;
}
 
G4KDNode* G4KDTree::Insert(const double& x, const double& y, const double& z, void *data)
{
    double buf[3];
    buf[0] = x;
    buf[1] = y;
    buf[2] = z;
    return Insert(buf, data);
}
 
//__________________________________________________________________
int G4KDTree::__NearestInRange(G4KDNode *node, const double *pos, const double& range_sq,
                          const double& range, G4KDTreeResult& list, int ordered, G4KDNode *source_node)
{
    if(!node) return 0;
 
    double dist_sq(DBL_MAX), dx(DBL_MAX);
    int ret(-1), added_res(0);
 
    if(node-> GetData() && node != source_node)
    {
        bool do_break = false ;
        dist_sq = 0;
        for(int i=0; i<fDim; i++)
        {
            dist_sq += sqr(node->GetPosition()[i] - pos[i]);
            if(dist_sq > range_sq)
            {
                do_break = true;
                break;
            }
        }
        if(!do_break && dist_sq <= range_sq)
        {
            list.Insert(dist_sq, node);
            added_res = 1;
        }
    }
 
    dx = pos[node->GetAxis()] - node->GetPosition()[node->GetAxis()];
 
    ret = __NearestInRange(dx <= 0.0 ? node->GetLeft() : node->GetRight(), pos, range_sq, range, list, ordered, source_node);
    if(ret >= 0 && fabs(dx) <= range)
    {
        added_res += ret;
        ret = __NearestInRange(dx <= 0.0 ? node->GetRight() : node->GetLeft(), pos, range_sq, range, list, ordered, source_node);
    }
 
    if(ret == -1)
    {
        return -1;
    }
    added_res += ret;
 
    return added_res;
}
 
//__________________________________________________________________
void G4KDTree::__NearestToPosition(G4KDNode *node, const double *pos, G4KDNode *&result,
                         double *result_dist_sq, HyperRect* rect)
{
    int dir = node->GetAxis();
    int i;
    double dummy(0.), dist_sq(-1.);
    G4KDNode *nearer_subtree(0), *farther_subtree (0);
    double *nearer_hyperrect_coord(0),*farther_hyperrect_coord(0);
 
    /* Decide whether to go left or right in the tree */
    dummy = pos[dir] - node->GetPosition()[dir];
    if (dummy <= 0)
    {
        nearer_subtree = node->GetLeft();
        farther_subtree = node->GetRight();
 
        nearer_hyperrect_coord = rect->GetMax() + dir;
        farther_hyperrect_coord = rect->GetMin() + dir;
    }
    else
    {
        nearer_subtree = node->GetRight();
        farther_subtree = node->GetLeft();
        nearer_hyperrect_coord = rect->GetMin() + dir;
        farther_hyperrect_coord = rect->GetMax() + dir;
    }
 
    if (nearer_subtree)
    {
        /* Slice the hyperrect to get the hyperrect of the nearer subtree */
        dummy = *nearer_hyperrect_coord;
        *nearer_hyperrect_coord = node->GetPosition()[dir];
        /* Recurse down into nearer subtree */
        __NearestToPosition(nearer_subtree, pos, result, result_dist_sq, rect);
        /* Undo the slice */
        *nearer_hyperrect_coord = dummy;
    }
 
    /* Check the distance of the point at the current node, compare it
     * with our best so far */
    if(node->GetData())
    {
        dist_sq = 0;
        bool do_break = false ;
        for(i=0; i < fDim; i++)
        {
            dist_sq += sqr(node->GetPosition()[i] - pos[i]);
            if(dist_sq > *result_dist_sq)
            {
                do_break = true;
                break ;
            }
        }
        if (!do_break && dist_sq < *result_dist_sq)
        {
            result = node;
            *result_dist_sq = dist_sq;
        }
    }
 
    if (farther_subtree)
    {
        /* Get the hyperrect of the farther subtree */
        dummy = *farther_hyperrect_coord;
        *farther_hyperrect_coord = node->GetPosition()[dir];
        /* Check if we have to recurse down by calculating the closest
         * point of the hyperrect and see if it's closer than our
         * minimum distance in result_dist_sq. */
        if (rect->CompareDistSqr(pos,result_dist_sq))
        {
            /* Recurse down into farther subtree */
            __NearestToPosition(farther_subtree, pos, result, result_dist_sq, rect);
        }
        /* Undo the slice on the hyperrect */
        *farther_hyperrect_coord = dummy;
    }
}
 
G4KDTreeResultHandle G4KDTree::Nearest(const double *pos)
{
//    G4cout << "Nearest(pos)" << G4endl ;
 
    if (!fRect) return 0;
 
    G4KDNode *result(0);
    double dist_sq = DBL_MAX;
 
    /* Duplicate the bounding hyperrectangle, we will work on the copy */
    HyperRect *newrect = new HyperRect(*fRect);
 
    /* Our first guesstimate is the root node */
    /* Search for the nearest neighbour recursively */
    __NearestToPosition(fRoot, pos, result, &dist_sq, newrect);
 
    /* Free the copy of the hyperrect */
    delete newrect;
 
    /* Store the result */
    if (result)
    {
        G4KDTreeResultHandle rset = new G4KDTreeResult(this);
        rset->Insert(dist_sq, result);
        rset -> Rewind();
        return rset;
    }
    else
    {
        return 0;
    }
}
 
//__________________________________________________________________
void G4KDTree::__NearestToNode(G4KDNode *source_node, G4KDNode *node,
                              const double *pos, std::vector<G4KDNode*>& result, double *result_dist_sq,
                              HyperRect* rect, int& nbresult)
{
    int dir = node->GetAxis();
    double dummy, dist_sq;
    G4KDNode *nearer_subtree (0), *farther_subtree (0);
    double *nearer_hyperrect_coord (0), *farther_hyperrect_coord (0);
 
    /* Decide whether to go left or right in the tree */
    dummy = pos[dir] - node->GetPosition()[dir];
    if (dummy <= 0)
    {
        nearer_subtree = node->GetLeft();
        farther_subtree = node->GetRight();
        nearer_hyperrect_coord = rect->GetMax() + dir;
        farther_hyperrect_coord = rect->GetMin() + dir;
    }
    else
    {
        nearer_subtree = node->GetRight();
        farther_subtree = node->GetLeft();
        nearer_hyperrect_coord = rect->GetMin() + dir;
        farther_hyperrect_coord = rect->GetMax() + dir;
    }
 
    if (nearer_subtree)
    {
        /* Slice the hyperrect to get the hyperrect of the nearer subtree */
        dummy = *nearer_hyperrect_coord;
        *nearer_hyperrect_coord = node->GetPosition()[dir];
        /* Recurse down into nearer subtree */
        __NearestToNode(source_node, nearer_subtree, pos, result, result_dist_sq, rect, nbresult);
        /* Undo the slice */
        *nearer_hyperrect_coord = dummy;
    }
 
    /* Check the distance of the point at the current node, compare it
     * with our best so far */
    if(node->GetData() && node != source_node)
    {
        dist_sq = 0;
        bool do_break = false;
        for(int i=0; i < fDim; i++)
        {
            dist_sq += sqr(node->GetPosition()[i] - pos[i]);
            if(dist_sq > *result_dist_sq)
            {
                do_break = true;
                break ;
            }
        }
        if(!do_break)
        {
            if (dist_sq < *result_dist_sq)
            {
                result.clear();
                nbresult = 1 ;
                result.push_back(node);
                *result_dist_sq = dist_sq;
            }
            else if(dist_sq == *result_dist_sq)
            {
                result.push_back(node);
                nbresult++;
            }
        }
    }
 
    if (farther_subtree)
    {
        /* Get the hyperrect of the farther subtree */
        dummy = *farther_hyperrect_coord;
        *farther_hyperrect_coord = node->GetPosition()[dir];
        /* Check if we have to recurse down by calculating the closest
         * point of the hyperrect and see if it's closer than our
         * minimum distance in result_dist_sq. */
        //        if (hyperrect_dist_sq(rect, pos) < *result_dist_sq)
        if (rect->CompareDistSqr(pos,result_dist_sq))
        {
            /* Recurse down into farther subtree */
            __NearestToNode(source_node, farther_subtree, pos, result, result_dist_sq, rect, nbresult);
        }
        /* Undo the slice on the hyperrect */
        *farther_hyperrect_coord = dummy;
    }
}
 
G4KDTreeResultHandle G4KDTree::Nearest(G4KDNode* node)
{
//    G4cout << "Nearest(node)" << G4endl ;
    if (!fRect)
    {
        G4cout << "Tree empty" << G4endl ;
        return 0;
    }
 
    const double* pos = node->GetPosition();
    std::vector<G4KDNode*> result;
    double dist_sq = DBL_MAX;
 
    /* Duplicate the bounding hyperrectangle, we will work on the copy */
    HyperRect *newrect = new HyperRect(*fRect);
 
    /* Search for the nearest neighbour recursively */
    int nbresult = 0 ;
 
    __NearestToNode(node, fRoot, pos, result, &dist_sq, newrect, nbresult);
 
    /* Free the copy of the hyperrect */
    delete newrect;
 
    /* Store the result */
    if (!result.empty())
    {
        G4KDTreeResultHandle rset(new G4KDTreeResult(this));
        int j = 0 ;
        while (j<nbresult)
        {
            rset->Insert(dist_sq, result[j]);
            j++;
        }
        rset->Rewind();
 
        return rset;
    }
    else
    {
        return 0;
    }
}
 
G4KDTreeResultHandle G4KDTree::Nearest(const double& x, const double& y, const double& z)
{
    double pos[3];
    pos[0] = x;
    pos[1] = y;
    pos[2] = z;
    return Nearest(pos);
}
 
G4KDTreeResultHandle G4KDTree::NearestInRange(const double *pos, const double& range)
{
    int ret(-1);
 
    const double range_sq = sqr(range) ;
 
    G4KDTreeResultHandle rset = new G4KDTreeResult(this);
    if((ret = __NearestInRange(fRoot, pos, range_sq, range, *(rset()), 0)) == -1)
    {
        rset = 0;
        return rset;
    }
    rset->Sort();
    rset->Rewind();
    return rset;
}
 
G4KDTreeResultHandle G4KDTree::NearestInRange(const double& x,
                                                const double& y,
                                                const double& z,
                                                const double& range)
{
    double buf[3];
    buf[0] = x;
    buf[1] = y;
    buf[2] = z;
    return NearestInRange(buf, range);
}
 
G4KDTreeResultHandle G4KDTree::NearestInRange( G4KDNode* node, const double& range)
{
    if(!node) return 0 ;
    int ret(-1);
 
    G4KDTreeResult *rset = new G4KDTreeResult(this);
 
    const double range_sq = sqr(range) ;
 
    if((ret = __NearestInRange(fRoot, node->GetPosition(), range_sq, range, *rset, 0, node)) == -1)
    {
        delete rset;
        return 0;
    }
    rset->Sort();
    rset->Rewind();
    return rset;
}